Orthogroup:group_859


Homologs in group_859

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_04345 FBDBKF_04345 Morganella morganii S1 murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
EHELCC_05635 EHELCC_05635 Morganella morganii S2 murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
NLDBIP_05955 NLDBIP_05955 Morganella morganii S4 murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
LHKJJB_02835 LHKJJB_02835 Morganella morganii S3 murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
HKOGLL_06310 HKOGLL_06310 Morganella morganii S5 murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
F4V73_RS08790 F4V73_RS08790 Morganella psychrotolerans murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
PMI_RS10210 PMI_RS10210 Proteus mirabilis HI4320 murD UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase

Distribution of group_859 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_859 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_859

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_859.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 murD 7

Product

# Product Occurence
1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0771 7 M Cell wall/membrane/envelope biogenesis (M) UDP-N-acetylmuramoylalanine-D-glutamate ligase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K01925 7 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] D-Amino acid metabolism
Peptidoglycan biosynthesis
Metabolic pathways		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF02875 7 Mur ligase, glutamate ligase domain
PF08245 7 Mur ligase middle domain
PF21799 7 Mur ligase MurD-like, N-terminal domain

Annotations of the 517 SwissProt hits

Annotation Number of occurrences
UDP-N-acetylmuramate--L-alanine ligase 33
UDP-N-acetylmuramoyl-L-alanine--L-glutamate ligase 10
UDP-N-acetylmuramoylalanine--D-glutamate ligase 474

Protein length

Min length 436
Max length 438
Mean length (sd) 437.7 (0.8)
Median length 438.0

Protein length distribution