PF01025


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01025, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01025
Description GrpE

Occurence in the database

PF01025 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_569 FBDBKF_01490 296525 297103 -1 grpE nucleotide exchange factor GrpE Morganella morganii S1
1 group_569 EHELCC_00055 11765 12343 1 grpE nucleotide exchange factor GrpE Morganella morganii S2
2 group_569 NLDBIP_03405 667793 668371 -1 grpE nucleotide exchange factor GrpE Morganella morganii S4
3 group_569 LHKJJB_04920 275034 275612 -1 grpE nucleotide exchange factor GrpE Morganella morganii S3
4 group_569 HKOGLL_02125 11970 12548 1 grpE nucleotide exchange factor GrpE Morganella morganii S5
5 group_569 F4V73_RS01915 419690 420268 1 grpE nucleotide exchange factor GrpE Morganella psychrotolerans
6 group_569 PMI_RS09375 2045517 2046128 -1 grpE nucleotide exchange factor GrpE Proteus mirabilis HI4320