PF01022


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01022, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01022
Description Bacterial regulatory protein, arsR family

Occurence in the database

PF01022 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_883 FBDBKF_04540 104032 104349 -1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S1
1 group_912 FBDBKF_04920 191988 192323 -1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S1
2 group_94 FBDBKF_20405 2899 3522 1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S1
3 group_883 EHELCC_05830 163489 163806 -1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S2
4 group_912 EHELCC_06210 251445 251780 -1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S2
5 group_94 EHELCC_19730 2899 3522 1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S2
6 group_883 NLDBIP_06150 204554 204871 -1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S4
7 group_912 NLDBIP_06530 292510 292845 -1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S4
8 group_94 NLDBIP_19710 2899 3522 1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S4
9 group_883 LHKJJB_03030 182078 182395 -1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S3
10 group_912 LHKJJB_03410 270034 270369 -1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S3
11 group_94 LHKJJB_19675 2980 3603 1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S3
12 group_883 HKOGLL_06505 103942 104259 -1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S5
13 group_912 HKOGLL_06885 191898 192233 -1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S5
14 group_94 HKOGLL_19590 2980 3603 1 arsR DNA-binding transcriptional regulator, ArsR family Morganella morganii S5
15 group_912 F4V73_RS04900 1042228 1042563 -1 metalloregulator ArsR/SmtB family transcription factor Morganella psychrotolerans
16 group_94 F4V73_RS08480 1750902 1751594 1 winged helix-turn-helix domain-containing protein Morganella psychrotolerans
17 group_883 F4V73_RS08995 1878795 1879124 -1 metalloregulator ArsR/SmtB family transcription factor Morganella psychrotolerans
18 group_94 PMI_RS06185 1356199 1356900 1 ArsR family transcriptional regulator Proteus mirabilis HI4320
19 group_883 PMI_RS10365 2277944 2278267 -1 metalloregulator ArsR/SmtB family transcription factor Proteus mirabilis HI4320
20 group_912 PMI_RS10605 2333545 2333880 -1 metalloregulator ArsR/SmtB family transcription factor Proteus mirabilis HI4320