PF00890


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00890, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00890
Description FAD binding domain

Occurence in the database

PF00890 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_776 FBDBKF_03590 122172 123458 -1 glpB glycerol-3-phosphate dehydrogenase subunit GlpB Morganella morganii S1
1 group_778 FBDBKF_03600 125700 127502 1 frdA fumarate reductase (quinol) flavoprotein subunit Morganella morganii S1
2 group_1521 FBDBKF_09830 62705 64414 -1 sdhA succinate dehydrogenase flavoprotein subunit Morganella morganii S1
3 group_1521 EHELCC_04630 254670 256379 -1 sdhA succinate dehydrogenase flavoprotein subunit Morganella morganii S2
4 group_778 EHELCC_06935 119601 121403 -1 frdA fumarate reductase (quinol) flavoprotein subunit Morganella morganii S2
5 group_776 EHELCC_06945 123645 124931 1 glpB glycerol-3-phosphate dehydrogenase subunit GlpB Morganella morganii S2
6 group_1521 NLDBIP_04630 254466 256175 -1 sdhA succinate dehydrogenase flavoprotein subunit Morganella morganii S4
7 group_778 NLDBIP_07260 119474 121276 -1 frdA fumarate reductase (quinol) flavoprotein subunit Morganella morganii S4
8 group_776 NLDBIP_07270 123518 124804 1 glpB glycerol-3-phosphate dehydrogenase subunit GlpB Morganella morganii S4
9 group_778 LHKJJB_06795 83220 85022 -1 frdA fumarate reductase (quinol) flavoprotein subunit Morganella morganii S3
10 group_776 LHKJJB_06805 87264 88550 1 glpB glycerol-3-phosphate dehydrogenase subunit GlpB Morganella morganii S3
11 group_1521 LHKJJB_14000 79203 80912 1 sdhA succinate dehydrogenase flavoprotein subunit Morganella morganii S3
12 group_776 HKOGLL_04125 144837 146123 -1 glpB glycerol-3-phosphate dehydrogenase subunit GlpB Morganella morganii S5
13 group_778 HKOGLL_04135 148365 150167 1 frdA fumarate reductase (quinol) flavoprotein subunit Morganella morganii S5
14 group_1521 HKOGLL_12535 63486 65195 -1 sdhA succinate dehydrogenase flavoprotein subunit Morganella morganii S5
15 group_1521 F4V73_RS00515 107960 109726 1 sdhA succinate dehydrogenase flavoprotein subunit Morganella psychrotolerans
16 group_778 F4V73_RS11270 393288 395090 -1 frdA fumarate reductase (quinol) flavoprotein subunit Morganella psychrotolerans
17 group_776 F4V73_RS11280 397472 398773 1 glpB glycerol-3-phosphate dehydrogenase subunit GlpB Morganella psychrotolerans
18 group_1521 PMI_RS02790 610987 612753 1 sdhA succinate dehydrogenase flavoprotein subunit Proteus mirabilis HI4320
19 group_778 PMI_RS17850 3918514 3920310 -1 frdA fumarate reductase (quinol) flavoprotein subunit Proteus mirabilis HI4320
20 group_776 PMI_RS17875 3927103 3928410 1 glpB glycerol-3-phosphate dehydrogenase subunit GlpB Proteus mirabilis HI4320