PF00885


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00885, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00885
Description 6,7-dimethyl-8-ribityllumazine synthase

Occurence in the database

PF00885 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2255 FBDBKF_17375 6095 6565 -1 ribE 6,7-dimethyl-8-ribityllumazine synthase Morganella morganii S1
1 group_2255 EHELCC_17270 6095 6565 -1 ribE 6,7-dimethyl-8-ribityllumazine synthase Morganella morganii S2
2 group_2255 NLDBIP_17925 36231 36701 1 ribE 6,7-dimethyl-8-ribityllumazine synthase Morganella morganii S4
3 group_2255 LHKJJB_17845 36229 36699 1 ribE 6,7-dimethyl-8-ribityllumazine synthase Morganella morganii S3
4 group_2255 HKOGLL_17855 36229 36699 1 ribE 6,7-dimethyl-8-ribityllumazine synthase Morganella morganii S5
5 group_2255 F4V73_RS16550 129797 130267 -1 ribE 6,7-dimethyl-8-ribityllumazine synthase Morganella psychrotolerans
6 group_2255 PMI_RS00395 110783 111253 1 ribE 6,7-dimethyl-8-ribityllumazine synthase Proteus mirabilis HI4320