PF00854


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00854, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00854
Description POT family

Occurence in the database

PF00854 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_497 FBDBKF_00920 168198 169721 1 pTR2 Dipeptide/tripeptide permease Morganella morganii S1
1 group_372 FBDBKF_13830 59825 61294 1 dtpB dipeptide/tripeptide permease DtpB Morganella morganii S1
2 group_497 EHELCC_00625 139147 140670 -1 pTR2 Dipeptide/tripeptide permease Morganella morganii S2
3 group_372 EHELCC_11500 144701 146170 1 dtpB dipeptide/tripeptide permease DtpB Morganella morganii S2
4 group_497 NLDBIP_02835 539466 540989 1 pTR2 Dipeptide/tripeptide permease Morganella morganii S4
5 group_372 NLDBIP_11845 144701 146170 1 dtpB dipeptide/tripeptide permease DtpB Morganella morganii S4
6 group_497 LHKJJB_04350 146707 148230 1 pTR2 Dipeptide/tripeptide permease Morganella morganii S3
7 group_372 LHKJJB_11705 144701 146170 1 dtpB dipeptide/tripeptide permease DtpB Morganella morganii S3
8 group_497 HKOGLL_02695 139352 140875 -1 pTR2 Dipeptide/tripeptide permease Morganella morganii S5
9 group_372 HKOGLL_10315 144701 146170 1 dtpB dipeptide/tripeptide permease DtpB Morganella morganii S5
10 group_497 F4V73_RS06915 1434308 1435831 1 peptide MFS transporter Morganella psychrotolerans
11 group_372 F4V73_RS12695 138302 139783 1 dtpB dipeptide/tripeptide permease DtpB Morganella psychrotolerans
12 group_372 PMI_RS01190 292575 294053 -1 dtpB dipeptide/tripeptide permease DtpB Proteus mirabilis HI4320
13 group_372 PMI_RS07725 1686209 1687675 -1 dtpA dipeptide/tripeptide permease DtpA Proteus mirabilis HI4320
14 group_497 PMI_RS08260 1805571 1807106 1 peptide MFS transporter Proteus mirabilis HI4320