PF00834


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00834, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00834
Description Ribulose-phosphate 3 epimerase family

Occurence in the database

PF00834 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1598 FBDBKF_10430 42200 42874 1 rpe ribulose-phosphate 3-epimerase Morganella morganii S1
1 group_1598 EHELCC_14765 42190 42864 1 rpe ribulose-phosphate 3-epimerase Morganella morganii S2
2 group_1598 NLDBIP_14595 42190 42864 1 rpe ribulose-phosphate 3-epimerase Morganella morganii S4
3 group_1598 LHKJJB_14750 98862 99536 -1 rpe ribulose-phosphate 3-epimerase Morganella morganii S3
4 group_1598 HKOGLL_13370 98862 99536 -1 rpe ribulose-phosphate 3-epimerase Morganella morganii S5
5 group_1598 F4V73_RS14125 38934 39608 1 rpe ribulose-phosphate 3-epimerase Morganella psychrotolerans
6 group_1598 PMI_RS14990 3327016 3327690 1 rpe ribulose-phosphate 3-epimerase Proteus mirabilis HI4320