PF00773


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00773, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00773
Description RNB domain

Occurence in the database

PF00773 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_932 FBDBKF_05060 17737 19674 1 rnb exoribonuclease II Morganella morganii S1
1 group_1371 FBDBKF_08485 77735 80173 1 rnr ribonuclease R Morganella morganii S1
2 group_932 EHELCC_12530 161820 163757 -1 rnb exoribonuclease II Morganella morganii S2
3 group_1371 EHELCC_13040 83552 85990 -1 rnr ribonuclease R Morganella morganii S2
4 group_932 NLDBIP_12870 161775 163712 -1 rnb exoribonuclease II Morganella morganii S4
5 group_1371 NLDBIP_13380 83552 85990 -1 rnr ribonuclease R Morganella morganii S4
6 group_932 LHKJJB_12730 161820 163757 -1 rnb exoribonuclease II Morganella morganii S3
7 group_1371 LHKJJB_13175 76453 78891 1 rnr ribonuclease R Morganella morganii S3
8 group_932 HKOGLL_11345 161820 163757 -1 rnb exoribonuclease II Morganella morganii S5
9 group_1371 HKOGLL_11855 83552 85990 -1 rnr ribonuclease R Morganella morganii S5
10 group_932 F4V73_RS05500 1169120 1171057 1 exoribonuclease II Morganella psychrotolerans
11 group_1371 F4V73_RS09705 43924 46365 1 rnr ribonuclease R Morganella psychrotolerans
12 group_932 PMI_RS06325 1385905 1387848 1 exoribonuclease II Proteus mirabilis HI4320
13 group_1371 PMI_RS16780 3699300 3701789 1 rnr ribonuclease R Proteus mirabilis HI4320