PF00725


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00725, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00725
Description 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

Occurence in the database

PF00725 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1931 FBDBKF_14360 71283 73433 -1 fadJ fatty acid oxidation complex subunit alpha FadJ Morganella morganii S1
1 group_2206 FBDBKF_16885 4437 6614 1 fadB fatty acid oxidation complex subunit alpha FadB Morganella morganii S1
2 group_1931 EHELCC_07920 43552 45702 1 fadJ fatty acid oxidation complex subunit alpha FadJ Morganella morganii S2
3 group_2206 EHELCC_19545 4844 7021 -1 fadB fatty acid oxidation complex subunit alpha FadB Morganella morganii S2
4 group_1931 NLDBIP_08245 43552 45702 1 fadJ fatty acid oxidation complex subunit alpha FadJ Morganella morganii S4
5 group_2206 NLDBIP_16915 61896 64073 -1 fadB fatty acid oxidation complex subunit alpha FadB Morganella morganii S4
6 group_1931 LHKJJB_06020 211457 213607 -1 fadJ fatty acid oxidation complex subunit alpha FadJ Morganella morganii S3
7 group_2206 LHKJJB_16555 4437 6614 1 fadB fatty acid oxidation complex subunit alpha FadB Morganella morganii S3
8 group_1931 HKOGLL_04895 28143 30293 1 fadJ fatty acid oxidation complex subunit alpha FadJ Morganella morganii S5
9 group_2206 HKOGLL_17520 4437 6614 1 fadB fatty acid oxidation complex subunit alpha FadB Morganella morganii S5
10 group_1931 F4V73_RS02545 537094 539259 1 fadJ fatty acid oxidation complex subunit alpha FadJ Morganella psychrotolerans
11 group_2206 F4V73_RS18355 4565 6742 1 fadB fatty acid oxidation complex subunit alpha FadB Morganella psychrotolerans
12 group_1931 PMI_RS08860 1936643 1938811 -1 fadJ fatty acid oxidation complex subunit alpha FadJ Proteus mirabilis HI4320
13 group_2206 PMI_RS17640 3869984 3872164 -1 fadB fatty acid oxidation complex subunit alpha FadB Proteus mirabilis HI4320