PF00572


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00572, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00572
Description Ribosomal protein L13

Occurence in the database

PF00572 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_718 FBDBKF_03130 28201 28629 -1 rplM 50S ribosomal protein L13 Morganella morganii S1
1 group_718 EHELCC_07405 218474 218902 1 rplM 50S ribosomal protein L13 Morganella morganii S2
2 group_718 NLDBIP_07730 218347 218775 1 rplM 50S ribosomal protein L13 Morganella morganii S4
3 group_718 LHKJJB_07265 182093 182521 1 rplM 50S ribosomal protein L13 Morganella morganii S3
4 group_718 HKOGLL_03665 50866 51294 -1 rplM 50S ribosomal protein L13 Morganella morganii S5
5 group_718 F4V73_RS11790 508630 509058 1 rplM 50S ribosomal protein L13 Morganella psychrotolerans
6 group_718 PMI_RS18255 4005076 4005504 1 rplM 50S ribosomal protein L13 Proteus mirabilis HI4320