PF00543


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00543, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00543
Description Nitrogen regulatory protein P-II

Occurence in the database

PF00543 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_40 FBDBKF_01175 218850 219188 -1 glnB nitrogen regulatory protein P-II Morganella morganii S1
1 group_40 FBDBKF_15935 38904 39242 1 glnK Nitrogen regulatory protein PII Morganella morganii S1
2 group_40 EHELCC_00370 89680 90018 1 glnB nitrogen regulatory protein P-II Morganella morganii S2
3 group_40 EHELCC_18535 26343 26681 1 glnK Nitrogen regulatory protein PII Morganella morganii S2
4 group_40 NLDBIP_03090 590118 590456 -1 glnB nitrogen regulatory protein P-II Morganella morganii S4
5 group_40 NLDBIP_17370 26343 26681 1 glnK Nitrogen regulatory protein PII Morganella morganii S4
6 group_40 LHKJJB_04605 197359 197697 -1 glnB nitrogen regulatory protein P-II Morganella morganii S3
7 group_40 LHKJJB_17290 29507 29845 -1 glnK Nitrogen regulatory protein PII Morganella morganii S3
8 group_40 HKOGLL_02440 89885 90223 1 glnB nitrogen regulatory protein P-II Morganella morganii S5
9 group_40 HKOGLL_17105 26343 26681 1 glnK Nitrogen regulatory protein PII Morganella morganii S5
10 group_40 F4V73_RS07245 1507599 1507937 -1 glnB nitrogen regulatory protein P-II Morganella psychrotolerans
11 group_40 F4V73_RS16375 91271 91609 -1 P-II family nitrogen regulator Morganella psychrotolerans
12 group_40 PMI_RS00610 157248 157586 1 P-II family nitrogen regulator Proteus mirabilis HI4320
13 group_40 PMI_RS09230 2011832 2012170 -1 glnB nitrogen regulatory protein P-II Proteus mirabilis HI4320