PF00533


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00533, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 10 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00533
Description BRCA1 C Terminus (BRCT) domain

Occurence in the database

PF00533 is associated with 10 different proteins (see tab "Protein list" and "Profile")
The 10 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_340 FBDBKF_11620 119565 121586 1 ligA NAD-dependent DNA ligase LigA Morganella morganii S1
1 group_340 EHELCC_17540 17908 19929 1 ligA NAD-dependent DNA ligase LigA Morganella morganii S2
2 group_3714 EHELCC_19180 8154 9041 -1 NAD-dependent DNA ligase Morganella morganii S2
3 group_340 NLDBIP_18750 18655 20676 1 ligA NAD-dependent DNA ligase LigA Morganella morganii S4
4 group_3714 NLDBIP_19150 14093 14980 -1 NAD-dependent DNA ligase Morganella morganii S4
5 group_340 LHKJJB_17980 17908 19929 1 ligA NAD-dependent DNA ligase LigA Morganella morganii S3
6 group_3714 LHKJJB_19040 14093 14980 -1 NAD-dependent DNA ligase Morganella morganii S3
7 group_340 HKOGLL_18670 4302 6323 -1 ligA NAD-dependent DNA ligase LigA Morganella morganii S5
8 group_340 F4V73_RS08060 1672225 1674255 -1 ligA NAD-dependent DNA ligase LigA Morganella psychrotolerans
9 group_340 PMI_RS08995 1960076 1962103 -1 ligA NAD-dependent DNA ligase LigA Proteus mirabilis HI4320