Homologs in group_3714

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2 homologs were identified in 2 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
NLDBIP_19150 NLDBIP_19150 100.0 Morganella morganii S4 - NAD-dependent DNA ligase
LHKJJB_19040 LHKJJB_19040 100.0 Morganella morganii S3 - NAD-dependent DNA ligase

Distribution of the homologs in the orthogroup group_3714

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3714

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7V9J2 0.000494 45 33 2 83 3 ligA DNA ligase Prochlorococcus marinus (strain SARG / CCMP1375 / SS120)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_19180
Feature type CDS
Gene -
Product NAD-dependent DNA ligase
Location 8154 - 9041 (strand: -1)
Length 888 (nucleotides) / 295 (amino acids)

Contig

Accession ZDB_242
Length 16493 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3714
Orthogroup size 3
N. genomes 3

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Genomic region

Domains

PF00533 BRCA1 C Terminus (BRCT) domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0272 Replication, recombination and repair (L) L NAD-dependent DNA ligase

Protein Sequence

MENLKVSYNYKKNRDKLFANLISIIDGILSDGVLQDDEILYLSTWLLEADAIADNDIVKLLVMRINRILEDGIITEDERSELKEELASIQKNLMDLPSLDLYSKESDINLLIGLCKGLIADRKLSEHEVRYLNWWLTVNGALKNNYPGKHLYECVTKVLADGVITKDESEFLYNELVAFTGCDVELGVVDGMTTKLPTDHIEPSMINSSTFCLTGKFLSGKRADIAEKIKKHGGVIDKSVRQRTNFLVVGTLSSRDWVYSSFGRKIEQTLEWKTSGISDIKIITEDQLMTVLPAS

Flanking regions ( +/- flanking 50bp)

TTGATTTATTTTGACTGAAGGTAAAGGATATAAAAAAAGATGGAGGATCCATGGAAAATCTAAAGGTTTCTTATAATTACAAGAAAAACAGAGATAAATTATTTGCTAACTTAATCAGCATTATTGACGGGATATTGTCGGATGGCGTACTTCAAGATGATGAAATTCTGTATTTAAGTACTTGGTTGCTAGAAGCTGATGCAATAGCTGACAATGATATTGTTAAGTTATTAGTTATGCGAATCAATAGGATACTTGAAGACGGTATTATTACAGAGGATGAGCGCTCAGAGCTTAAAGAGGAGCTTGCGAGTATACAGAAAAACTTGATGGATCTTCCAAGTTTAGATCTGTATTCAAAAGAGTCAGATATTAACCTCCTAATTGGCCTATGCAAGGGGCTTATAGCAGACCGGAAGTTATCGGAACATGAGGTGAGGTATCTTAATTGGTGGCTCACCGTTAACGGGGCGTTGAAAAATAATTACCCAGGAAAACACCTGTATGAATGTGTCACTAAGGTTTTGGCCGATGGCGTAATAACCAAAGATGAAAGTGAGTTTTTGTATAATGAATTAGTAGCTTTCACTGGTTGTGATGTTGAGCTTGGGGTCGTTGATGGTATGACCACAAAACTGCCAACTGATCACATCGAACCATCAATGATAAATTCTTCAACATTCTGTTTAACAGGAAAATTTTTATCAGGAAAGCGCGCCGATATTGCAGAAAAAATAAAAAAACATGGTGGTGTAATTGATAAATCTGTCAGGCAAAGAACAAATTTTCTTGTTGTAGGCACTTTATCATCCCGTGATTGGGTTTACTCCAGCTTTGGGCGAAAAATAGAACAAACGCTGGAGTGGAAGACAAGCGGAATATCAGATATAAAAATTATCACCGAAGATCAGTTGATGACCGTACTACCAGCGTCTTGATGACCAAAAAACCCTACCTATAACGTGTATTCTTGCCCTGGTGTGGTCAT