PF00453


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00453, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00453
Description Ribosomal protein L20

Occurence in the database

PF00453 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1808 FBDBKF_13415 61240 61596 -1 rplT 50S ribosomal protein L20 Morganella morganii S1
1 group_1808 EHELCC_08680 213595 213951 1 rplT 50S ribosomal protein L20 Morganella morganii S2
2 group_1808 NLDBIP_09005 213595 213951 1 rplT 50S ribosomal protein L20 Morganella morganii S4
3 group_1808 LHKJJB_05260 43208 43564 -1 rplT 50S ribosomal protein L20 Morganella morganii S3
4 group_1808 HKOGLL_05655 198186 198542 1 rplT 50S ribosomal protein L20 Morganella morganii S5
5 group_1808 F4V73_RS03350 714215 714571 1 rplT 50S ribosomal protein L20 Morganella psychrotolerans
6 group_1808 PMI_RS05040 1101083 1101439 1 rplT 50S ribosomal protein L20 Proteus mirabilis HI4320