PF00436


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00436, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00436
Description Single-strand binding protein family

Occurence in the database

PF00436 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_38 FBDBKF_00315 43090 43554 1 Single-stranded DNA-binding protein Morganella morganii S1
1 group_38 FBDBKF_17025 35684 36202 -1 ssb Single-stranded DNA-binding protein Morganella morganii S1
2 group_38 EHELCC_01230 265314 265778 -1 Single-stranded DNA-binding protein Morganella morganii S2
3 group_38 EHELCC_16565 32308 32826 1 ssb Single-stranded DNA-binding protein Morganella morganii S2
4 group_38 NLDBIP_02230 414358 414822 1 Single-stranded DNA-binding protein Morganella morganii S4
5 group_38 NLDBIP_16775 32308 32826 1 ssb Single-stranded DNA-binding protein Morganella morganii S4
6 group_38 LHKJJB_03745 21599 22063 1 Single-stranded DNA-binding protein Morganella morganii S3
7 group_38 LHKJJB_16695 35684 36202 -1 ssb Single-stranded DNA-binding protein Morganella morganii S3
8 group_38 HKOGLL_03300 265519 265983 -1 Single-stranded DNA-binding protein Morganella morganii S5
9 group_38 HKOGLL_17660 35684 36202 -1 ssb Single-stranded DNA-binding protein Morganella morganii S5
10 group_38 F4V73_RS18505 36585 37112 -1 single-stranded DNA-binding protein Morganella psychrotolerans
11 group_38 PMI_RS04420 987453 987950 -1 ssb single-stranded DNA-binding protein Proteus mirabilis HI4320
12 group_38 PMI_RS12105 2676675 2677094 -1 ssb single-stranded DNA-binding protein Proteus mirabilis HI4320
13 group_38 PMI_RS13540 3004258 3004782 1 ssb1 single-stranded DNA-binding protein SSB1 Proteus mirabilis HI4320