Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00436
Protein list: lists the 14 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.
| Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
|---|---|---|---|---|---|---|---|---|
| 0 | group_442 | FBDBKF_00315 | 43090 | 43554 | 1 | Single-stranded DNA-binding protein | Morganella morganii S1 | |
| 1 | group_443 | FBDBKF_17025 | 35684 | 36202 | -1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S1 |
| 2 | group_442 | EHELCC_01230 | 265314 | 265778 | -1 | Single-stranded DNA-binding protein | Morganella morganii S2 | |
| 3 | group_443 | EHELCC_16565 | 32308 | 32826 | 1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S2 |
| 4 | group_442 | NLDBIP_02230 | 414358 | 414822 | 1 | Single-stranded DNA-binding protein | Morganella morganii S4 | |
| 5 | group_443 | NLDBIP_16775 | 32308 | 32826 | 1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S4 |
| 6 | group_442 | LHKJJB_03745 | 21599 | 22063 | 1 | Single-stranded DNA-binding protein | Morganella morganii S3 | |
| 7 | group_443 | LHKJJB_16695 | 35684 | 36202 | -1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S3 |
| 8 | group_442 | HKOGLL_03300 | 265519 | 265983 | -1 | Single-stranded DNA-binding protein | Morganella morganii S5 | |
| 9 | group_443 | HKOGLL_17660 | 35684 | 36202 | -1 | ssb | Single-stranded DNA-binding protein | Morganella morganii S5 |
| 10 | group_443 | F4V73_RS18505 | 36585 | 37112 | -1 | single-stranded DNA-binding protein | Morganella psychrotolerans | |
| 11 | group_442 | PMI_RS04420 | 987453 | 987950 | -1 | ssb | single-stranded DNA-binding protein | Proteus mirabilis HI4320 |
| 12 | group_442 | PMI_RS12105 | 2676675 | 2677094 | -1 | ssb | single-stranded DNA-binding protein | Proteus mirabilis HI4320 |
| 13 | group_443 | PMI_RS13540 | 3004258 | 3004782 | 1 | ssb1 | single-stranded DNA-binding protein SSB1 | Proteus mirabilis HI4320 |
