PF00413


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00413, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 5 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00413
Description Matrixin

Occurence in the database

PF00413 is associated with 5 different proteins (see tab "Protein list" and "Profile")
The 5 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_302 F4V73_RS13010 215450 216904 -1 serralysin family metalloprotease Morganella psychrotolerans
1 group_302 PMI_RS01355 328957 330432 -1 serralysin family metalloprotease Proteus mirabilis HI4320
2 group_3133 PMI_RS01360 331042 333105 -1 M10 family metallopeptidase Proteus mirabilis HI4320
3 group_3133 PMI_RS01370 335607 337571 -1 M10 family metallopeptidase C-terminal domain-containing protein Proteus mirabilis HI4320
4 group_3133 PMI_RS01375 338218 340167 -1 M10 family metallopeptidase C-terminal domain-containing protein Proteus mirabilis HI4320