PF00398


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00398, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 9 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00398
Description Ribosomal RNA adenine dimethylase

Occurence in the database

PF00398 is associated with 9 different proteins (see tab "Protein list" and "Profile")
The 9 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1101 FBDBKF_06265 86502 87314 1 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA Morganella morganii S1
1 group_1101 EHELCC_09310 87074 87886 1 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA Morganella morganii S2
2 group_1101 NLDBIP_09690 87074 87886 1 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA Morganella morganii S4
3 group_1101 LHKJJB_08065 129352 130164 -1 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA Morganella morganii S3
4 group_1101 HKOGLL_07615 129352 130164 -1 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA Morganella morganii S5
5 group_502 F4V73_RS07045 1462897 1463472 1 rRNA adenine N-6-methyltransferase family protein Morganella psychrotolerans
6 group_1101 F4V73_RS15655 126775 127587 -1 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA Morganella psychrotolerans
7 group_1101 PMI_RS11545 2547238 2548056 1 rsmA 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA Proteus mirabilis HI4320
8 group_502 PMI_RS15525 3453549 3454112 1 rRNA adenine N-6-methyltransferase family protein Proteus mirabilis HI4320