PF00375


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00375, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00375
Description Sodium:dicarboxylate symporter family

Occurence in the database

PF00375 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_88 FBDBKF_07495 11823 13118 1 gltP Na+/H+-dicarboxylate symporter Morganella morganii S1
1 group_368 FBDBKF_13485 74689 76083 1 tcyP L-cystine transporter TcyP, sodium:dicarboxylate symporter family Morganella morganii S1
2 group_88 FBDBKF_18790 4115 5413 1 gltP Na+/H+-dicarboxylate symporter Morganella morganii S1
3 group_368 EHELCC_08610 199108 200502 -1 tcyP L-cystine transporter TcyP, sodium:dicarboxylate symporter family Morganella morganii S2
4 group_88 EHELCC_16985 4116 5414 1 gltP Na+/H+-dicarboxylate symporter Morganella morganii S2
5 group_88 EHELCC_17165 39473 40768 1 gltP Na+/H+-dicarboxylate symporter Morganella morganii S2
6 group_368 NLDBIP_08935 199108 200502 -1 tcyP L-cystine transporter TcyP, sodium:dicarboxylate symporter family Morganella morganii S4
7 group_88 NLDBIP_13770 6892 8187 1 gltP Na+/H+-dicarboxylate symporter Morganella morganii S4
8 group_88 NLDBIP_18365 4115 5413 1 gltP Na+/H+-dicarboxylate symporter Morganella morganii S4
9 group_368 LHKJJB_05330 56657 58051 1 tcyP L-cystine transporter TcyP, sodium:dicarboxylate symporter family Morganella morganii S3
10 group_88 LHKJJB_09080 151562 152857 -1 gltP Na+/H+-dicarboxylate symporter Morganella morganii S3
11 group_88 LHKJJB_09260 186916 188214 -1 gltP Na+/H+-dicarboxylate symporter Morganella morganii S3
12 group_368 HKOGLL_05585 183699 185093 -1 tcyP L-cystine transporter TcyP, sodium:dicarboxylate symporter family Morganella morganii S5
13 group_88 HKOGLL_08630 151562 152857 -1 gltP Na+/H+-dicarboxylate symporter Morganella morganii S5
14 group_88 HKOGLL_08810 186916 188214 -1 gltP Na+/H+-dicarboxylate symporter Morganella morganii S5
15 group_368 F4V73_RS03280 699687 701081 -1 L-cystine transporter Morganella psychrotolerans
16 group_88 F4V73_RS13620 358734 360026 -1 dicarboxylate/amino acid:cation symporter Morganella psychrotolerans
17 group_88 F4V73_RS13805 394654 395967 -1 dicarboxylate/amino acid:cation symporter Morganella psychrotolerans
18 group_368 PMI_RS04950 1084435 1085826 -1 L-cystine transporter Proteus mirabilis HI4320
19 group_368 PMI_RS18415 4038945 4040198 1 sstT serine/threonine transporter SstT Proteus mirabilis HI4320