Orthogroup:group_87


Homologs in group_87

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12 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_06695 FBDBKF_06695 Morganella morganii S1 - tRNA-dihydrouridine synthase C
FBDBKF_09520 FBDBKF_09520 Morganella morganii S1 dusC tRNA dihydrouridine(16) synthase DusC
EHELCC_04275 EHELCC_04275 Morganella morganii S2 - tRNA-dihydrouridine synthase C
EHELCC_04320 EHELCC_04320 Morganella morganii S2 dusC tRNA dihydrouridine(16) synthase DusC
NLDBIP_04275 NLDBIP_04275 Morganella morganii S4 - tRNA-dihydrouridine synthase C
NLDBIP_04320 NLDBIP_04320 Morganella morganii S4 dusC tRNA dihydrouridine(16) synthase DusC
LHKJJB_10105 LHKJJB_10105 Morganella morganii S3 - tRNA-dihydrouridine synthase C
LHKJJB_14310 LHKJJB_14310 Morganella morganii S3 dusC tRNA dihydrouridine(16) synthase DusC
HKOGLL_08870 HKOGLL_08870 Morganella morganii S5 - tRNA-dihydrouridine synthase C
HKOGLL_12225 HKOGLL_12225 Morganella morganii S5 dusC tRNA dihydrouridine(16) synthase DusC
F4V73_RS00835 F4V73_RS00835 Morganella psychrotolerans dusC tRNA dihydrouridine(16) synthase DusC
PMI_RS03060 PMI_RS03060 Proteus mirabilis HI4320 dusC tRNA dihydrouridine(16) synthase DusC

Distribution of group_87 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_87 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_87

Orthogroup content: 12 members

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This page summarizes the annotation of all members of the orthologous group group_87.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 5
2 dusC 7

Product

# Product Occurence
1 tRNA-dihydrouridine synthase C 5
2 tRNA dihydrouridine(16) synthase DusC 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0042 12 J Translation, ribosomal structure and biogenesis (J) tRNA-dihydrouridine synthase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K05541 7 tRNA-dihydrouridine synthase C [EC:1.-.-.-] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01207 12 Dihydrouridine synthase (Dus)

Annotations of the 165 SwissProt hits

Annotation Number of occurrences
7-beta-hydroxy-3-oxochol-24-oyl-CoA 4-desaturase 1
Dihydroorotate dehydrogenase A (fumarate) 3
Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 11
Probable tRNA-dihydrouridine synthase 23
Probable tRNA-dihydrouridine synthase 1 2
Probable tRNA-dihydrouridine synthase 2 1
Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 1
tRNA-dihydrouridine synthase B 23
tRNA-dihydrouridine(16) synthase 23
tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] 2
tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like 3
tRNA-dihydrouridine(20) synthase [NAD(P)+] 2
tRNA-dihydrouridine(20) synthase [NAD(P)+]-like 2
tRNA-dihydrouridine(20/20a) synthase 23
tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] 2
tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like 2
tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 33
tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 8

Protein length

Min length 204
Max length 330
Mean length (sd) 267.5 (56.3)
Median length 310.0

Protein length distribution