PF00348


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00348, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00348
Description Polyprenyl synthetase

Occurence in the database

PF00348 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1390 FBDBKF_08590 100328 101299 -1 ispB octaprenyl diphosphate synthase Morganella morganii S1
1 group_2251 FBDBKF_17355 1655 2572 1 ispA (2E,6E)-farnesyl diphosphate synthase Morganella morganii S1
2 group_1390 EHELCC_12935 62426 63397 1 ispB octaprenyl diphosphate synthase Morganella morganii S2
3 group_2251 EHELCC_17250 1655 2572 1 ispA (2E,6E)-farnesyl diphosphate synthase Morganella morganii S2
4 group_1390 NLDBIP_13275 62426 63397 1 ispB octaprenyl diphosphate synthase Morganella morganii S4
5 group_2251 NLDBIP_17945 40224 41141 -1 ispA (2E,6E)-farnesyl diphosphate synthase Morganella morganii S4
6 group_1390 LHKJJB_13280 99046 100017 -1 ispB octaprenyl diphosphate synthase Morganella morganii S3
7 group_2251 LHKJJB_17865 40222 41139 -1 ispA (2E,6E)-farnesyl diphosphate synthase Morganella morganii S3
8 group_1390 HKOGLL_11750 62426 63397 1 ispB octaprenyl diphosphate synthase Morganella morganii S5
9 group_2251 HKOGLL_17875 40222 41139 -1 ispA (2E,6E)-farnesyl diphosphate synthase Morganella morganii S5
10 group_1390 F4V73_RS09815 66914 67885 -1 ispB octaprenyl diphosphate synthase Morganella psychrotolerans
11 group_2251 F4V73_RS16530 125329 126246 1 ispA (2E,6E)-farnesyl diphosphate synthase Morganella psychrotolerans
12 group_2251 PMI_RS00455 122511 123434 -1 ispA (2E,6E)-farnesyl diphosphate synthase Proteus mirabilis HI4320
13 group_1390 PMI_RS16945 3730695 3731666 -1 ispB octaprenyl diphosphate synthase Proteus mirabilis HI4320