PF00333


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00333, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00333
Description Ribosomal protein S5, N-terminal domain

Occurence in the database

PF00333 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2382 FBDBKF_19160 14869 15369 -1 rpsE 30S ribosomal protein S5 Morganella morganii S1
1 group_2382 EHELCC_18905 14869 15369 -1 rpsE 30S ribosomal protein S5 Morganella morganii S2
2 group_2382 NLDBIP_18920 14869 15369 -1 rpsE 30S ribosomal protein S5 Morganella morganii S4
3 group_2382 LHKJJB_18775 14869 15369 -1 rpsE 30S ribosomal protein S5 Morganella morganii S3
4 group_2382 HKOGLL_18510 14869 15369 -1 rpsE 30S ribosomal protein S5 Morganella morganii S5
5 group_2382 F4V73_RS19005 14969 15469 1 rpsE 30S ribosomal protein S5 Morganella psychrotolerans
6 group_2382 PMI_RS16235 3590448 3590948 1 rpsE 30S ribosomal protein S5 Proteus mirabilis HI4320