Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00330, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_837 | FBDBKF_04220 | 27957 | 30554 | -1 | acnB | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | Morganella morganii S1 |
1 | group_871 | FBDBKF_04420 | 77363 | 78775 | 1 | leuC | Homoaconitase/3-isopropylmalate dehydratase large subunit | Morganella morganii S1 |
2 | group_939 | FBDBKF_05100 | 24531 | 27203 | -1 | acnA | aconitate hydratase AcnA | Morganella morganii S1 |
3 | group_837 | EHELCC_05510 | 87414 | 90011 | -1 | acnB | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | Morganella morganii S2 |
4 | group_871 | EHELCC_05710 | 136820 | 138232 | 1 | leuC | Homoaconitase/3-isopropylmalate dehydratase large subunit | Morganella morganii S2 |
5 | group_939 | EHELCC_12490 | 154291 | 156963 | 1 | acnA | aconitate hydratase AcnA | Morganella morganii S2 |
6 | group_837 | NLDBIP_05830 | 128479 | 131076 | -1 | acnB | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | Morganella morganii S4 |
7 | group_871 | NLDBIP_06030 | 177885 | 179297 | 1 | leuC | Homoaconitase/3-isopropylmalate dehydratase large subunit | Morganella morganii S4 |
8 | group_939 | NLDBIP_12830 | 154246 | 156918 | 1 | acnA | aconitate hydratase AcnA | Morganella morganii S4 |
9 | group_837 | LHKJJB_02710 | 106003 | 108600 | -1 | acnB | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | Morganella morganii S3 |
10 | group_871 | LHKJJB_02910 | 155409 | 156821 | 1 | leuC | Homoaconitase/3-isopropylmalate dehydratase large subunit | Morganella morganii S3 |
11 | group_939 | LHKJJB_12690 | 154291 | 156963 | 1 | acnA | aconitate hydratase AcnA | Morganella morganii S3 |
12 | group_837 | HKOGLL_06185 | 27867 | 30464 | -1 | acnB | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | Morganella morganii S5 |
13 | group_871 | HKOGLL_06385 | 77273 | 78685 | 1 | leuC | Homoaconitase/3-isopropylmalate dehydratase large subunit | Morganella morganii S5 |
14 | group_939 | HKOGLL_11305 | 154291 | 156963 | 1 | acnA | aconitate hydratase AcnA | Morganella morganii S5 |
15 | group_939 | F4V73_RS05555 | 1179598 | 1182264 | -1 | acnA | aconitate hydratase AcnA | Morganella psychrotolerans |
16 | group_837 | F4V73_RS08670 | 1789011 | 1791608 | -1 | acnB | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | Morganella psychrotolerans |
17 | group_871 | F4V73_RS08865 | 1838494 | 1839906 | 1 | leuC | 3-isopropylmalate dehydratase large subunit | Morganella psychrotolerans |
18 | group_939 | PMI_RS06370 | 1395199 | 1397871 | -1 | acnA | aconitate hydratase AcnA | Proteus mirabilis HI4320 |
19 | group_837 | PMI_RS10060 | 2181232 | 2183829 | -1 | acnB | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase | Proteus mirabilis HI4320 |
20 | group_871 | PMI_RS10275 | 2253054 | 2254463 | 1 | leuC | 3-isopropylmalate dehydratase large subunit | Proteus mirabilis HI4320 |