Orthogroup:group_940



Homologs in group_940

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05115 FBDBKF_05115 Morganella morganii S1 topA type I DNA topoisomerase
EHELCC_12475 EHELCC_12475 Morganella morganii S2 topA type I DNA topoisomerase
NLDBIP_12815 NLDBIP_12815 Morganella morganii S4 topA type I DNA topoisomerase
LHKJJB_12675 LHKJJB_12675 Morganella morganii S3 topA type I DNA topoisomerase
HKOGLL_11290 HKOGLL_11290 Morganella morganii S5 topA type I DNA topoisomerase
F4V73_RS05570 F4V73_RS05570 Morganella psychrotolerans topA type I DNA topoisomerase
PMI_RS06435 PMI_RS06435 Proteus mirabilis HI4320 topA type I DNA topoisomerase

Distribution of group_940 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_940 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_940

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_940.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 topA 7

Product

# Product Occurence
1 type I DNA topoisomerase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0550 7 L Replication, recombination and repair (L) DNA topoisomerase IA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03168 7 DNA topoisomerase I [EC:5.6.2.1] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01131 7 DNA topoisomerase
PF01396 7 Topoisomerase DNA binding C4 zinc finger
PF01751 7 Toprim domain
PF08272 7 Topoisomerase I zinc-ribbon-like
PF21372 7 Topoisomerase I, zinc finger

Annotations of the 134 SwissProt hits

Annotation Number of occurrences
DNA topoisomerase 1 64
DNA topoisomerase 1 type prokaryotic 1
DNA topoisomerase 3 32
DNA topoisomerase 3-alpha 5
DNA topoisomerase 3-beta 3
DNA topoisomerase 3-beta-1 2
DNA topoisomerase I, plasmid 1
Putative DNA topoisomerase 3 1
Reverse gyrase 10
Reverse gyrase 1 5
Reverse gyrase 2 5
Reverse gyrase subunit A 2
Reverse gyrase subunit B 1
Uncharacterized protein HI_0656.1 1
Uncharacterized protein YrdD 1

Protein length

Min length 862
Max length 866
Mean length (sd) 863.0 (1.7)
Median length 862.0

Protein length distribution