PF00309


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00309, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00309
Description Sigma-54 factor, Activator interacting domain (AID)

Occurence in the database

PF00309 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_735 FBDBKF_03250 50651 52087 1 rpoN RNA polymerase factor sigma-54 Morganella morganii S1
1 group_735 EHELCC_07285 195016 196452 -1 rpoN RNA polymerase factor sigma-54 Morganella morganii S2
2 group_735 NLDBIP_07610 194889 196325 -1 rpoN RNA polymerase factor sigma-54 Morganella morganii S4
3 group_735 LHKJJB_07145 158635 160071 -1 rpoN RNA polymerase factor sigma-54 Morganella morganii S3
4 group_735 HKOGLL_03785 73316 74752 1 rpoN RNA polymerase factor sigma-54 Morganella morganii S5
5 group_735 F4V73_RS11670 484558 485994 -1 rpoN RNA polymerase factor sigma-54 Morganella psychrotolerans
6 group_735 PMI_RS18150 3985286 3986761 -1 rpoN RNA polymerase factor sigma-54 Proteus mirabilis HI4320