PF00237


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00237, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00237
Description Ribosomal protein L22p/L17e

Occurence in the database

PF00237 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2394 FBDBKF_19220 20055 20387 -1 rplV 50S ribosomal protein L22 Morganella morganii S1
1 group_2394 EHELCC_18965 20055 20387 -1 rplV 50S ribosomal protein L22 Morganella morganii S2
2 group_2394 NLDBIP_18980 20055 20387 -1 rplV 50S ribosomal protein L22 Morganella morganii S4
3 group_2394 LHKJJB_18835 20055 20387 -1 rplV 50S ribosomal protein L22 Morganella morganii S3
4 group_2394 HKOGLL_18570 20055 20387 -1 rplV 50S ribosomal protein L22 Morganella morganii S5
5 group_2394 F4V73_RS18945 9951 10283 1 rplV 50S ribosomal protein L22 Morganella psychrotolerans
6 group_2394 PMI_RS16175 3585434 3585766 1 rplV 50S ribosomal protein L22 Proteus mirabilis HI4320