Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00206, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 36 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF00206 |
---|---|
Description | Lyase |
Occurence in the database
PF00206 is associated with 36 different proteins (see tab "Protein list" and "Profile") |
The 36 proteins are classified into 5 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_254 | FBDBKF_03785 | 159935 | 161305 | -1 | purB | Adenylosuccinate lyase | Morganella morganii S1 |
1 | group_808 | FBDBKF_03815 | 167109 | 168533 | 1 | aspA | aspartate ammonia-lyase | Morganella morganii S1 |
2 | group_920 | FBDBKF_04990 | 1882 | 3276 | -1 | fumC | class II fumarate hydratase | Morganella morganii S1 |
3 | group_1743 | FBDBKF_12155 | 86775 | 88154 | -1 | argH | argininosuccinate lyase | Morganella morganii S1 |
4 | group_1942 | FBDBKF_14570 | 8072 | 9439 | 1 | purB | adenylosuccinate lyase | Morganella morganii S1 |
5 | group_808 | EHELCC_06720 | 78570 | 79994 | -1 | aspA | aspartate ammonia-lyase | Morganella morganii S2 |
6 | group_254 | EHELCC_06750 | 85798 | 87168 | 1 | purB | Adenylosuccinate lyase | Morganella morganii S2 |
7 | group_920 | EHELCC_12600 | 178218 | 179612 | 1 | fumC | class II fumarate hydratase | Morganella morganii S2 |
8 | group_1743 | EHELCC_14150 | 46551 | 47930 | 1 | argH | argininosuccinate lyase | Morganella morganii S2 |
9 | group_1942 | EHELCC_15375 | 38148 | 39515 | 1 | purB | adenylosuccinate lyase | Morganella morganii S2 |
10 | group_808 | NLDBIP_07045 | 78443 | 79867 | -1 | aspA | aspartate ammonia-lyase | Morganella morganii S4 |
11 | group_254 | NLDBIP_07075 | 85671 | 87041 | 1 | purB | Adenylosuccinate lyase | Morganella morganii S4 |
12 | group_920 | NLDBIP_12940 | 178173 | 179567 | 1 | fumC | class II fumarate hydratase | Morganella morganii S4 |
13 | group_1743 | NLDBIP_15245 | 50488 | 51867 | 1 | argH | argininosuccinate lyase | Morganella morganii S4 |
14 | group_1942 | NLDBIP_15905 | 38148 | 39515 | 1 | purB | adenylosuccinate lyase | Morganella morganii S4 |
15 | group_808 | LHKJJB_06580 | 42189 | 43613 | -1 | aspA | aspartate ammonia-lyase | Morganella morganii S3 |
16 | group_254 | LHKJJB_06610 | 49417 | 50787 | 1 | purB | Adenylosuccinate lyase | Morganella morganii S3 |
17 | group_920 | LHKJJB_12800 | 178218 | 179612 | 1 | fumC | class II fumarate hydratase | Morganella morganii S3 |
18 | group_1743 | LHKJJB_15365 | 86775 | 88154 | -1 | argH | argininosuccinate lyase | Morganella morganii S3 |
19 | group_1942 | LHKJJB_15935 | 77171 | 78538 | -1 | purB | adenylosuccinate lyase | Morganella morganii S3 |
20 | group_254 | HKOGLL_04320 | 182600 | 183970 | -1 | purB | Adenylosuccinate lyase | Morganella morganii S5 |
21 | group_808 | HKOGLL_04350 | 189774 | 191198 | 1 | aspA | aspartate ammonia-lyase | Morganella morganii S5 |
22 | group_920 | HKOGLL_11415 | 178218 | 179612 | 1 | fumC | class II fumarate hydratase | Morganella morganii S5 |
23 | group_1743 | HKOGLL_14485 | 73438 | 74817 | -1 | argH | argininosuccinate lyase | Morganella morganii S5 |
24 | group_1942 | HKOGLL_15055 | 76383 | 77750 | -1 | purB | adenylosuccinate lyase | Morganella morganii S5 |
25 | group_920 | F4V73_RS05435 | 1154543 | 1155937 | -1 | fumC | class II fumarate hydratase | Morganella psychrotolerans |
26 | group_1942 | F4V73_RS07365 | 1536308 | 1537675 | 1 | purB | adenylosuccinate lyase | Morganella psychrotolerans |
27 | group_808 | F4V73_RS11055 | 347901 | 349325 | -1 | aspA | aspartate ammonia-lyase | Morganella psychrotolerans |
28 | group_254 | F4V73_RS11085 | 355260 | 356630 | 1 | adenylosuccinate lyase family protein | Morganella psychrotolerans | |
29 | group_1743 | F4V73_RS16965 | 14398 | 15777 | -1 | argH | argininosuccinate lyase | Morganella psychrotolerans |
30 | group_254 | PMI_RS03090 | 680327 | 681694 | 1 | purB | adenylosuccinate lyase | Proteus mirabilis HI4320 |
31 | group_1942 | PMI_RS04355 | 978518 | 979888 | -1 | purB | adenylosuccinate lyase | Proteus mirabilis HI4320 |
32 | group_920 | PMI_RS06255 | 1369935 | 1371332 | -1 | fumC | class II fumarate hydratase | Proteus mirabilis HI4320 |
33 | group_808 | PMI_RS12590 | 2789722 | 2791146 | 1 | aspA | aspartate ammonia-lyase | Proteus mirabilis HI4320 |
34 | group_254 | PMI_RS14740 | 3269739 | 3271109 | -1 | adenylosuccinate lyase family protein | Proteus mirabilis HI4320 | |
35 | group_1743 | PMI_RS16020 | 3560115 | 3561497 | 1 | argH | argininosuccinate lyase | Proteus mirabilis HI4320 |