PF00116


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00116, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00116
Description Cytochrome C oxidase subunit II, periplasmic domain

Occurence in the database

PF00116 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2105 FBDBKF_15840 17825 18775 -1 cyoA cytochrome o ubiquinol oxidase subunit II Morganella morganii S1
1 group_2105 EHELCC_18440 5264 6214 -1 cyoA cytochrome o ubiquinol oxidase subunit II Morganella morganii S2
2 group_2105 NLDBIP_17275 5264 6214 -1 cyoA cytochrome o ubiquinol oxidase subunit II Morganella morganii S4
3 group_2105 LHKJJB_17385 49974 50924 1 cyoA cytochrome o ubiquinol oxidase subunit II Morganella morganii S3
4 group_2105 HKOGLL_17010 5264 6214 -1 cyoA cytochrome o ubiquinol oxidase subunit II Morganella morganii S5
5 group_2105 F4V73_RS16470 112898 113851 1 cyoA cytochrome o ubiquinol oxidase subunit II Morganella psychrotolerans
6 group_2105 PMI_RS00520 134281 135231 -1 cyoA cytochrome o ubiquinol oxidase subunit II Proteus mirabilis HI4320