K04488


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K04488, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.

Description

External link K04488
KO K04488
Description nitrogen fixation protein NifU and related proteins

KO part of 0 pathways

KO part of 0 modules

Occurence in the database

K04488 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_525 PMI_RS09175 2000430 2000816 -1 iscU Fe-S cluster assembly scaffold IscU Proteus mirabilis HI4320
1 group_525 FBDBKF_01130 210334 210720 -1 iscU Fe-S cluster assembly scaffold protein IscU, NifU family Morganella morganii S1
2 group_525 EHELCC_00415 98148 98534 1 iscU Fe-S cluster assembly scaffold protein IscU, NifU family Morganella morganii S2
3 group_525 NLDBIP_03045 581602 581988 -1 iscU Fe-S cluster assembly scaffold protein IscU, NifU family Morganella morganii S4
4 group_525 LHKJJB_04560 188843 189229 -1 iscU Fe-S cluster assembly scaffold protein IscU, NifU family Morganella morganii S3
5 group_525 HKOGLL_02485 98353 98739 1 iscU Fe-S cluster assembly scaffold protein IscU, NifU family Morganella morganii S5
6 group_525 F4V73_RS07200 1498352 1498738 -1 iscU Fe-S cluster assembly scaffold IscU Morganella psychrotolerans