Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Kegg Ortholog K03308
Protein list: lists the 7 occurences of the Kegg Ortholog within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Kegg Ortholog of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Ortholog has been clustered.
Orthogroups are shown in red if they are annotated with that particular Kegg Ortholog in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Kegg Ortholog prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Ortholog.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Ortholog prediction.
Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
---|---|---|---|---|---|---|---|---|
0 | group_769 | FBDBKF_02990 | 360 | 1676 | -1 | yocR | Na+-dependent transporter, SNF family | Morganella morganii S1 |
1 | group_769 | EHELCC_07545 | 245427 | 246743 | 1 | yocR | Na+-dependent transporter, SNF family | Morganella morganii S2 |
2 | group_769 | NLDBIP_07870 | 245300 | 246616 | 1 | yocR | Na+-dependent transporter, SNF family | Morganella morganii S4 |
3 | group_769 | LHKJJB_07405 | 209046 | 210362 | 1 | yocR | Na+-dependent transporter, SNF family | Morganella morganii S3 |
4 | group_769 | HKOGLL_03525 | 23025 | 24341 | -1 | yocR | Na+-dependent transporter, SNF family | Morganella morganii S5 |
5 | group_769 | F4V73_RS11920 | 537732 | 539048 | 1 | sodium-dependent transporter | Morganella psychrotolerans | |
6 | group_769 | PMI_RS14735 | 3268333 | 3269649 | 1 | sodium-dependent transporter | Proteus mirabilis HI4320 |