K03089


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K03089, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.

Description

External link K03089
KO K03089
Description RNA polymerase sigma-32 factor

KO part of 0 pathways

KO part of 0 modules

Occurence in the database

K03089 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_764 PMI_RS17955 3946115 3946969 1 rpoH RNA polymerase sigma factor RpoH Proteus mirabilis HI4320
1 group_764 FBDBKF_03515 107558 108412 -1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S1
2 group_764 EHELCC_07020 138691 139545 1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S2
3 group_764 NLDBIP_07345 138564 139418 1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S4
4 group_764 LHKJJB_06880 102310 103164 1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S3
5 group_764 HKOGLL_04050 130223 131077 -1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S5
6 group_764 F4V73_RS11385 419291 420145 1 rpoH RNA polymerase sigma factor RpoH Morganella psychrotolerans