K00239


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K00239, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.

Description

External link K00239
KO K00239
Description succinate dehydrogenase flavoprotein subunit [EC:1.3.5.1]

KO part of 9 pathways

Citrate cycle (TCA cycle)
Oxidative phosphorylation
Butanoate metabolism
Carbon fixation pathways in prokaryotes
Metabolic pathways
Biosynthesis of secondary metabolites
Microbial metabolism in diverse environments
Carbon metabolism
Legionellosis

KO part of 6 modules

M00009 Central carbohydrate metabolism Citrate cycle (TCA cycle, Krebs cycle)
M00011 Central carbohydrate metabolism Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
M00149 ATP synthesis Succinate dehydrogenase, prokaryotes
M00173 Carbon fixation Reductive citrate cycle (Arnon-Buchanan cycle)
M00374 Carbon fixation Dicarboxylate-hydroxybutyrate cycle
M00376 Carbon fixation 3-Hydroxypropionate bi-cycle

Occurence in the database

K00239 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1521 PMI_RS02790 610987 612753 1 sdhA succinate dehydrogenase flavoprotein subunit Proteus mirabilis HI4320
1 group_778 PMI_RS17850 3918514 3920310 -1 frdA fumarate reductase (quinol) flavoprotein subunit Proteus mirabilis HI4320
2 group_778 FBDBKF_03600 125700 127502 1 frdA fumarate reductase (quinol) flavoprotein subunit Morganella morganii S1
3 group_778 EHELCC_06935 119601 121403 -1 frdA fumarate reductase (quinol) flavoprotein subunit Morganella morganii S2
4 group_778 NLDBIP_07260 119474 121276 -1 frdA fumarate reductase (quinol) flavoprotein subunit Morganella morganii S4
5 group_778 LHKJJB_06795 83220 85022 -1 frdA fumarate reductase (quinol) flavoprotein subunit Morganella morganii S3
6 group_778 HKOGLL_04135 148365 150167 1 frdA fumarate reductase (quinol) flavoprotein subunit Morganella morganii S5
7 group_1521 FBDBKF_09830 62705 64414 -1 sdhA succinate dehydrogenase flavoprotein subunit Morganella morganii S1
8 group_1521 EHELCC_04630 254670 256379 -1 sdhA succinate dehydrogenase flavoprotein subunit Morganella morganii S2
9 group_1521 NLDBIP_04630 254466 256175 -1 sdhA succinate dehydrogenase flavoprotein subunit Morganella morganii S4
10 group_1521 LHKJJB_14000 79203 80912 1 sdhA succinate dehydrogenase flavoprotein subunit Morganella morganii S3
11 group_1521 HKOGLL_12535 63486 65195 -1 sdhA succinate dehydrogenase flavoprotein subunit Morganella morganii S5
12 group_1521 F4V73_RS00515 107960 109726 1 sdhA succinate dehydrogenase flavoprotein subunit Morganella psychrotolerans
13 group_778 F4V73_RS11270 393288 395090 -1 frdA fumarate reductase (quinol) flavoprotein subunit Morganella psychrotolerans