Help to interpret the results
Four outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected GI cluster GIC33
GIs list: lists the 1 occurences of the GI cluster within the database. The table reports information on each occurence.
Orthogroup list: lists the 12 orthogroups associated with the GI cluster
Profile: phylogenetic tree annotated with
- the presence of the GI cluster of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) associated with the GI cluster in each genome.
Orthogroups are shown in red if they are found withinin the that particular GI cluster in a given genome , in green otherwise, i.e. if the orthogroup is present in the genome but not in that GI cluster.
Green homologs (same orthogroup) are not found inside the considered GI cluster.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or GI cluster prediction.
Description
| Cluster ID | GIC33 |
|---|---|
| Length | 5729 |
Occurence in the database
| GIC33 is associated with 1 different genomic islands |
Genes in magenta are AMR genes, while purple correspond to VF genes.
Links are coloured wiht a scale of gray reflecting the sequence identity: dark gray for highly conserved, light grey for features with less identity. Click on the link to visualise the percentage of identity. Beginning and end of the regions are shown as dashed line if the region shows a complete circular contig, a double line if the start or end of the region matches the start or end of a linear contig and a single line otherwise.
Genomic regions
| ID | Organism | Bioentry | Start | End | Length | |
|---|---|---|---|---|---|---|
| 66 | GI66 | Morganella psychrotolerans | NZ_VXKB01000002 | 338840 | 344569 | 5729 |
| Orthogroup | Products | Genes | |
|---|---|---|---|
| 4609 | group_4609 | - | hypothetical protein (1) |
| 4484 | group_4484 | - | hypothetical protein (1) |
| 390 | group_390 | - | Outer membrane usher protein (5) outer membrane usher protein (1) fimbria/pilus outer membrane usher protein (1) |
| 3116 | group_3116 | - | DUF2543 domain-containing protein (5) DUF2543 family protein (1) |
| 14 | group_14 | xerD (15) mrpI (1) |
Site-specific recombinase XerD (15) tyrosine-type DNA invertase (2) tyrosine-type recombinase/integrase (1) phase variation DNA invertase MrpI (1) |
| 17 | group_17 | fimC (10) | P pilus assembly protein, chaperone PapD (10) molecular chaperone (2) fimbria/pilus periplasmic chaperone (3) fimbrial chaperone (1) |
| 1492 | group_1492 | phnA (5) | Uncharacterized Zn-ribbon-containing protein (5) zinc ribbon domain-containing protein YjdM (2) |
| 26 | group_26 | hipB (10) mrpJ (1) |
Transcriptional regulator, contains XRE-family HTH domain (10) helix-turn-helix transcriptional regulator (3) transcriptional regulator MrpJ (1) |
| 2812 | group_2812 | - | Fimbrial protein (5) fimbrial protein (1) |
| 2813 | group_2813 | - | Minor pili exported protein (5) fimbrial protein (1) |
| 2814 | group_2814 | - | Fimbrial protein (5) hypothetical protein (1) |
| 2815 | group_2815 | - | Fimbrial protein (5) fimbrial protein (1) |
