Help to interpret the results
Four outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected GI cluster GIC27
GIs list: lists the 1 occurences of the GI cluster within the database. The table reports information on each occurence.
Orthogroup list: lists the 36 orthogroups associated with the GI cluster
Profile: phylogenetic tree annotated with
- the presence of the GI cluster of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) associated with the GI cluster in each genome.
Orthogroups are shown in red if they are found withinin the that particular GI cluster in a given genome , in green otherwise, i.e. if the orthogroup is present in the genome but not in that GI cluster.
Green homologs (same orthogroup) are not found inside the considered GI cluster.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or GI cluster prediction.
Description
| Cluster ID | GIC27 |
|---|---|
| Length | 27873 |
Occurence in the database
| GIC27 is associated with 1 different genomic islands |
Genes in magenta are AMR genes, while purple correspond to VF genes.
Links are coloured wiht a scale of gray reflecting the sequence identity: dark gray for highly conserved, light grey for features with less identity. Click on the link to visualise the percentage of identity. Beginning and end of the regions are shown as dashed line if the region shows a complete circular contig, a double line if the start or end of the region matches the start or end of a linear contig and a single line otherwise.
Genomic regions
| ID | Organism | Bioentry | Start | End | Length | |
|---|---|---|---|---|---|---|
| 58 | GI58 | Proteus mirabilis HI4320 | NC_010554 | 2117376 | 2145249 | 27873 |
| Orthogroup | Products | Genes | |
|---|---|---|---|
| 4353 | group_4353 | - | tail protein X (1) |
| 3844 | group_3844 | - | M15 family metallopeptidase (2) |
| 3845 | group_3845 | - | phage holin family protein (2) |
| 4493 | group_4493 | - | phage baseplate assembly protein V (1) |
| 3982 | group_3982 | - | phage tail tape measure protein (1) |
| 4110 | group_4110 | - | phage tail protein I (1) |
| 4368 | group_4368 | - | phage tail assembly protein (1) |
| 3987 | group_3987 | gpM (1) | phage terminase small subunit (1) |
| 3997 | group_3997 | - | hypothetical protein (1) |
| 3998 | group_3998 | - | phage virion morphogenesis protein (1) |
| 4513 | group_4513 | - | phage tail protein (1) |
| 4774 | group_4774 | - | DUF5405 family protein (1) |
| 4651 | group_4651 | - | XRE family transcriptional regulator (1) |
| 300 | group_300 | dam (7) | adenine-specific DNA-methyltransferase (7) Dam family site-specific DNA-(adenine-N6)-methyltransferase (1) |
| 3779 | group_3779 | - | Phage tail sheath protein (1) phage tail sheath protein (1) |
| 4170 | group_4170 | - | phage portal protein (1) |
| 4171 | group_4171 | - | GpE family phage tail protein (1) |
| 4053 | group_4053 | - | head completion/stabilization protein (1) |
| 4569 | group_4569 | - | DUF2732 family protein (1) |
| 4317 | group_4317 | - | hypothetical protein (1) |
| 4704 | group_4704 | - | phage late control D family protein (1) |
| 4832 | group_4832 | - | phage major tail tube protein (1) |
| 3937 | group_3937 | - | baseplate assembly protein (1) |
| 4451 | group_4451 | - | ogr/Delta-like zinc finger family protein (1) |
| 4324 | group_4324 | - | terminase ATPase subunit family protein (1) |
| 4449 | group_4449 | - | replication endonuclease (1) |
| 4579 | group_4579 | - | TraR/DksA family transcriptional regulator (1) |
| 2919 | group_2919 | - | lysis protein (5) lysis system i-spanin subunit Rz (1) |
| 4844 | group_4844 | - | phage tail protein (1) |
| 4204 | group_4204 | - | GPW/gp25 family protein (1) |
| 4465 | group_4465 | - | hypothetical protein (1) |
| 3829 | group_3829 | - | P2 family phage major capsid protein (1) phage major capsid protein, P2 family (1) |
| 3830 | group_3830 | - | GPO family capsid scaffolding protein (2) |
| 4469 | group_4469 | - | DUF5347 family protein (1) |
| 4860 | group_4860 | - | phage tail protein (1) |
| 4095 | group_4095 | - | hypothetical protein (1) |
