COG5006


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG5006, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Threonine/homoserine efflux transporter RhtA
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG5006 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1170 FBDBKF_06725 7831 8730 -1 rhtA threonine/homoserine exporter RhtA Morganella morganii S1
1 group_1170 EHELCC_04245 177456 178355 1 rhtA threonine/homoserine exporter RhtA Morganella morganii S2
2 group_1170 NLDBIP_04245 177252 178151 1 rhtA threonine/homoserine exporter RhtA Morganella morganii S4
3 group_1170 LHKJJB_10075 177366 178265 1 rhtA threonine/homoserine exporter RhtA Morganella morganii S3
4 group_1170 HKOGLL_08900 12787 13686 -1 rhtA threonine/homoserine exporter RhtA Morganella morganii S5
5 group_1170 F4V73_RS00880 184915 185814 -1 rhtA threonine/homoserine exporter RhtA Morganella psychrotolerans
6 group_4092 F4V73_RS08495 1753707 1754597 1 DMT family transporter Morganella psychrotolerans
7 group_1170 PMI_RS03115 687390 688280 -1 rhtA threonine/homoserine exporter RhtA Proteus mirabilis HI4320