COG4969


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4969, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type IV pilus assembly protein, major pilin PilA
Function(s) descr. Cell motility (N)
Extracellular structures (W)

Occurence in the database

COG4969 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_842 FBDBKF_04255 39424 39843 1 ppdD prepilin peptidase-dependent pilin Morganella morganii S1
1 group_842 EHELCC_05545 98881 99300 1 ppdD prepilin peptidase-dependent pilin Morganella morganii S2
2 group_842 NLDBIP_05865 139946 140365 1 ppdD prepilin peptidase-dependent pilin Morganella morganii S4
3 group_842 LHKJJB_02745 117470 117889 1 ppdD prepilin peptidase-dependent pilin Morganella morganii S3
4 group_842 HKOGLL_06220 39334 39753 1 ppdD prepilin peptidase-dependent pilin Morganella morganii S5
5 group_842 F4V73_RS08700 1800493 1800912 1 ppdD prepilin peptidase-dependent pilin Morganella psychrotolerans
6 group_842 PMI_RS10100 2207345 2207788 1 ppdD prepilin peptidase-dependent pilin Proteus mirabilis HI4320