COG4625


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4625, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 3 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain
Function(s) descr. Function unknown (S)

Occurence in the database

COG4625 is associated with 3 different proteins (see tab "Protein list" and "Profile")
The 3 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_215 PMI_RS04145 929289 932210 -1 autotransporter domain-containing protein Proteus mirabilis HI4320
1 group_215 PMI_RS10480 2301662 2303827 1 autotransporter outer membrane beta-barrel domain-containing protein Proteus mirabilis HI4320
2 group_215 PMI_RS11580 2553568 2556822 -1 pta autotransporter Pta Proteus mirabilis HI4320