COG4618


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4618, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type protease/lipase transport system, ATPase and permease components
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG4618 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1304 FBDBKF_07985 128231 129937 1 arpD ABC-type protease/lipase transport system, ATPase and permease components Morganella morganii S1
1 group_1304 EHELCC_13815 102425 104131 1 arpD ABC-type protease/lipase transport system, ATPase and permease components Morganella morganii S2
2 group_1304 NLDBIP_14260 123300 125006 1 arpD ABC-type protease/lipase transport system, ATPase and permease components Morganella morganii S4
3 group_1304 LHKJJB_08590 34743 36449 -1 arpD ABC-type protease/lipase transport system, ATPase and permease components Morganella morganii S3
4 group_1304 HKOGLL_08140 34743 36449 -1 arpD ABC-type protease/lipase transport system, ATPase and permease components Morganella morganii S5
5 group_1304 F4V73_RS13000 213123 214883 -1 type I secretion system permease/ATPase Morganella psychrotolerans
6 group_1304 PMI_RS01350 327055 328794 -1 type I secretion system permease/ATPase Proteus mirabilis HI4320