COG4238


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4238, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Outer membrane murein-binding lipoprotein Lpp
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG4238 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1028 FBDBKF_05795 162137 162373 1 lpp Major outer membrane lipoprotein Lpp Morganella morganii S1
1 group_1028 EHELCC_11795 19121 19357 -1 lpp Major outer membrane lipoprotein Lpp Morganella morganii S2
2 group_1028 NLDBIP_12135 19076 19312 -1 lpp Major outer membrane lipoprotein Lpp Morganella morganii S4
3 group_1028 LHKJJB_11995 19121 19357 -1 lpp Major outer membrane lipoprotein Lpp Morganella morganii S3
4 group_1028 HKOGLL_10610 19121 19357 -1 lpp Major outer membrane lipoprotein Lpp Morganella morganii S5
5 group_1028 F4V73_RS03530 755114 755350 -1 major outer membrane lipoprotein Morganella psychrotolerans
6 group_1028 PMI_RS06815 1488740 1488979 1 Lpp/OprI family alanine-zipper lipoprotein Proteus mirabilis HI4320