COG4235


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4235, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Cytochrome c-type biogenesis protein CcmH/NrfG
Function(s) descr. Energy production and conversion (C)
Posttranslational modification, protein turnover, chaperones (O)

Occurence in the database

COG4235 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_513 FBDBKF_01065 194305 194655 -1 pilF Type IV pilus assembly protein PilF/PilW Morganella morganii S1
1 group_513 EHELCC_00480 114213 114563 1 pilF Type IV pilus assembly protein PilF/PilW Morganella morganii S2
2 group_513 NLDBIP_02980 565573 565923 -1 pilF Type IV pilus assembly protein PilF/PilW Morganella morganii S4
3 group_513 LHKJJB_04495 172814 173164 -1 pilF Type IV pilus assembly protein PilF/PilW Morganella morganii S3
4 group_513 HKOGLL_02550 114418 114768 1 pilF Type IV pilus assembly protein PilF/PilW Morganella morganii S5
5 group_513 F4V73_RS07140 1482737 1483087 -1 hypothetical protein Morganella psychrotolerans