COG4176


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4176, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type proline/glycine betaine transport system, permease component
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG4176 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1569 FBDBKF_10165 124334 125473 1 proW glycine betaine/L-proline ABC transporter permease ProW Morganella morganii S1
1 group_1569 EHELCC_04965 316299 317438 1 proW glycine betaine/L-proline ABC transporter permease ProW Morganella morganii S2
2 group_1569 NLDBIP_04965 316095 317234 1 proW glycine betaine/L-proline ABC transporter permease ProW Morganella morganii S4
3 group_1569 LHKJJB_13665 18144 19283 -1 proW glycine betaine/L-proline ABC transporter permease ProW Morganella morganii S3
4 group_1569 HKOGLL_12870 125115 126254 1 proW glycine betaine/L-proline ABC transporter permease ProW Morganella morganii S5
5 group_1569 F4V73_RS00175 45733 46845 -1 proW glycine betaine/L-proline ABC transporter permease ProW Morganella psychrotolerans
6 group_1569 PMI_RS02025 478575 479804 -1 proW glycine betaine/L-proline ABC transporter permease ProW Proteus mirabilis HI4320