COG4175


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4175, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type proline/glycine betaine transport system, ATPase component
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG4175 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1568 FBDBKF_10160 123142 124347 1 proV glycine betaine/L-proline ABC transporter ATP-binding protein ProV Morganella morganii S1
1 group_1568 EHELCC_04960 315107 316312 1 proV glycine betaine/L-proline ABC transporter ATP-binding protein ProV Morganella morganii S2
2 group_1568 NLDBIP_04960 314903 316108 1 proV glycine betaine/L-proline ABC transporter ATP-binding protein ProV Morganella morganii S4
3 group_1568 LHKJJB_13670 19270 20475 -1 proV glycine betaine/L-proline ABC transporter ATP-binding protein ProV Morganella morganii S3
4 group_1568 HKOGLL_12865 123923 125128 1 proV glycine betaine/L-proline ABC transporter ATP-binding protein ProV Morganella morganii S5
5 group_1568 F4V73_RS00180 46832 48037 -1 proV glycine betaine/L-proline ABC transporter ATP-binding protein ProV Morganella psychrotolerans
6 group_1568 PMI_RS02030 479797 480996 -1 proV glycine betaine/L-proline ABC transporter ATP-binding protein ProV Proteus mirabilis HI4320