COG4171


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4171, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type antimicrobial peptide export system, permease component SapC
Function(s) descr. Defense mechanisms (V)

Occurence in the database

COG4171 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1008 FBDBKF_05630 133612 134502 1 sapC putrescine export ABC transporter permease SapC Morganella morganii S1
1 group_1008 EHELCC_11960 46992 47882 -1 sapC putrescine export ABC transporter permease SapC Morganella morganii S2
2 group_1008 NLDBIP_12300 46947 47837 -1 sapC putrescine export ABC transporter permease SapC Morganella morganii S4
3 group_1008 LHKJJB_12160 46992 47882 -1 sapC putrescine export ABC transporter permease SapC Morganella morganii S3
4 group_1008 HKOGLL_10775 46992 47882 -1 sapC putrescine export ABC transporter permease SapC Morganella morganii S5
5 group_1008 F4V73_RS03675 780457 781347 -1 sapC putrescine export ABC transporter permease SapC Morganella psychrotolerans
6 group_1008 PMI_RS06665 1458567 1459460 1 sapC putrescine export ABC transporter permease SapC Proteus mirabilis HI4320