COG4139


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4139, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type cobalamin transport system, permease component BtuC
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG4139 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_367 FBDBKF_13390 56074 57084 -1 btuC vitamin B12 ABC transporter permease BtuC Morganella morganii S1
1 group_367 EHELCC_08705 218107 219117 1 btuC vitamin B12 ABC transporter permease BtuC Morganella morganii S2
2 group_367 NLDBIP_09030 218107 219117 1 btuC vitamin B12 ABC transporter permease BtuC Morganella morganii S4
3 group_367 LHKJJB_05235 38042 39052 -1 btuC vitamin B12 ABC transporter permease BtuC Morganella morganii S3
4 group_367 HKOGLL_05680 202698 203708 1 btuC vitamin B12 ABC transporter permease BtuC Morganella morganii S5
5 group_367 F4V73_RS03370 718727 719737 1 btuC vitamin B12 ABC transporter permease BtuC Morganella psychrotolerans
6 group_367 PMI_RS05060 1105734 1106768 1 btuC vitamin B12 ABC transporter permease BtuC Proteus mirabilis HI4320