COG3713


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3713, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG3713 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_986 FBDBKF_05450 98681 99439 -1 ompV Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family Morganella morganii S1
1 group_986 EHELCC_12140 82055 82813 1 ompV Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family Morganella morganii S2
2 group_986 NLDBIP_12480 82010 82768 1 ompV Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family Morganella morganii S4
3 group_986 LHKJJB_12340 82055 82813 1 ompV Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family Morganella morganii S3
4 group_986 HKOGLL_10955 82055 82813 1 ompV Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family Morganella morganii S5
5 group_986 F4V73_RS03845 815577 816335 1 MipA/OmpV family protein Morganella psychrotolerans
6 group_986 PMI_RS07300 1598031 1598783 -1 MipA/OmpV family protein Proteus mirabilis HI4320