COG3681


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3681, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description L-cysteine desulfidase YhaM
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG3681 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_298 FBDBKF_07855 98400 99707 -1 cdsB L-cysteine desulfidase YhaM Morganella morganii S1
1 group_298 EHELCC_13685 72594 73901 -1 cdsB L-cysteine desulfidase YhaM Morganella morganii S2
2 group_298 NLDBIP_14130 93469 94776 -1 cdsB L-cysteine desulfidase YhaM Morganella morganii S4
3 group_298 LHKJJB_08720 64973 66280 1 cdsB L-cysteine desulfidase YhaM Morganella morganii S3
4 group_298 HKOGLL_08270 64973 66280 1 cdsB L-cysteine desulfidase YhaM Morganella morganii S5
5 group_298 F4V73_RS13175 254029 255336 1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha Morganella psychrotolerans
6 group_298 PMI_RS00700 179588 180910 -1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha Proteus mirabilis HI4320
7 group_298 PMI_RS13525 2997776 2999125 -1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha Proteus mirabilis HI4320