Orthogroup:group_298



Homologs in group_298

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07855 FBDBKF_07855 Morganella morganii S1 cdsB L-cysteine desulfidase YhaM
EHELCC_13685 EHELCC_13685 Morganella morganii S2 cdsB L-cysteine desulfidase YhaM
NLDBIP_14130 NLDBIP_14130 Morganella morganii S4 cdsB L-cysteine desulfidase YhaM
LHKJJB_08720 LHKJJB_08720 Morganella morganii S3 cdsB L-cysteine desulfidase YhaM
HKOGLL_08270 HKOGLL_08270 Morganella morganii S5 cdsB L-cysteine desulfidase YhaM
F4V73_RS13175 F4V73_RS13175 Morganella psychrotolerans - L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha
PMI_RS00700 PMI_RS00700 Proteus mirabilis HI4320 - L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha
PMI_RS13525 PMI_RS13525 Proteus mirabilis HI4320 - L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha

Distribution of group_298 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_298 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_298

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_298.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 cdsB 5
2 - 3

Product

# Product Occurence
1 L-cysteine desulfidase YhaM 5
2 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha 3

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3681 8 E Amino acid transport and metabolism (E) L-cysteine desulfidase YhaM

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03313 8 Serine dehydratase alpha chain

Annotations of the 131 SwissProt hits

Annotation Number of occurrences
L-cysteine desulfidase 5
UPF0597 protein AHA_1619 1
UPF0597 protein AHA_4077 1
UPF0597 protein APJL_1638 1
UPF0597 protein APL_1605 1
UPF0597 protein ASA_0240 1
UPF0597 protein Amet_4665 1
UPF0597 protein BDI_1130 1
UPF0597 protein BF3560 1
UPF0597 protein BF3772 1
UPF0597 protein BT_2080 1
UPF0597 protein BVU_2091 1
UPF0597 protein CBO1815/CLC_1757 1
UPF0597 protein CBO1964/CLC_1909 1
UPF0597 protein CBO2008/CLC_1955 1
UPF0597 protein CD630_32320 1
UPF0597 protein CKO_04510 1
UPF0597 protein CLB_1750 1
UPF0597 protein CLB_1903 1
UPF0597 protein CLB_1949 1
UPF0597 protein CLD_2616 1
UPF0597 protein CLD_2660 1
UPF0597 protein CLD_2825 1
UPF0597 protein CLI_1810 1
UPF0597 protein CLI_2031 1
UPF0597 protein CLI_2075 1
UPF0597 protein CLK_1197 1
UPF0597 protein CLK_1462 1
UPF0597 protein CPE0806 1
UPF0597 protein CPF_0803 1
UPF0597 protein CPR_0790 1
UPF0597 protein CTC_02309 1
UPF0597 protein CV_1824 1
UPF0597 protein Clos_2050 1
UPF0597 protein Cphy_1256 1
UPF0597 protein DNO_0106 1
UPF0597 protein DP0591 1
UPF0597 protein DSY1109 1
UPF0597 protein DVU_0440 1
UPF0597 protein Dalk_4447 1
UPF0597 protein Dde_0807 1
UPF0597 protein DvMF_1488 1
UPF0597 protein Dvul_2496 1
UPF0597 protein Emin_0811 1
UPF0597 protein FMG_0209 1
UPF0597 protein FN1147 1
UPF0597 protein Fnod_1278 1
UPF0597 protein Fphi_1065 1
UPF0597 protein GSU1527 1
UPF0597 protein HI_0855 1
UPF0597 protein HRM2_02820 1
UPF0597 protein KPN78578_43500 1
UPF0597 protein Kole_0595 1
UPF0597 protein LCA_0156 1
UPF0597 protein Moth_1414 1
UPF0597 protein NAMH_0191 1
UPF0597 protein NTHI1023 1
UPF0597 protein PBPRB0240 1
UPF0597 protein PG_0909 1
UPF0597 protein PPA0217 1
UPF0597 protein SO_1403 1
UPF0597 protein Sbal195_3223 1
UPF0597 protein Sbal223_1296 1
UPF0597 protein Sbal_3070 1
UPF0597 protein Shal_0864 1
UPF0597 protein Shew185_3080 1
UPF0597 protein Shewana3_2972 1
UPF0597 protein Shewmr4_2793 1
UPF0597 protein Shewmr7_2876 1
UPF0597 protein Spea_0809 1
UPF0597 protein Sputcn32_1209 1
UPF0597 protein Sputw3181_2955 1
UPF0597 protein Ssed_2537 1
UPF0597 protein Swoo_4889 1
UPF0597 protein TDE_2144 1
UPF0597 protein THA_1286 1
UPF0597 protein TTE0269 1
UPF0597 protein Tmel_1007 1
UPF0597 protein UNCMA_16400 1
UPF0597 protein VFMJ11_0655 1
UPF0597 protein VF_0641 1
UPF0597 protein VIBHAR_03081 1
UPF0597 protein VP2173 1
UPF0597 protein VSAL_I0741 1
UPF0597 protein YE0448 1
UPF0597 protein YhaM 42

Protein length

Min length 435
Max length 449
Mean length (sd) 437.4 (5.0)
Median length 435.0

Protein length distribution