COG3201


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3201, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Nicotinamide riboside transporter PnuC
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG3201 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1503 FBDBKF_09705 40376 41077 -1 pnuC nicotinamide riboside transporter PnuC Morganella morganii S1
1 group_1503 EHELCC_04505 232341 233042 -1 pnuC nicotinamide riboside transporter PnuC Morganella morganii S2
2 group_1503 NLDBIP_04505 232137 232838 -1 pnuC nicotinamide riboside transporter PnuC Morganella morganii S4
3 group_1503 LHKJJB_14125 102540 103241 1 pnuC nicotinamide riboside transporter PnuC Morganella morganii S3
4 group_1503 HKOGLL_12410 41157 41858 -1 pnuC nicotinamide riboside transporter PnuC Morganella morganii S5
5 group_1503 F4V73_RS00635 131702 132403 1 pnuC nicotinamide riboside transporter PnuC Morganella psychrotolerans
6 group_1503 PMI_RS02900 634809 635537 1 pnuC nicotinamide riboside transporter PnuC Proteus mirabilis HI4320