COG3133


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3133, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Outer membrane lipoprotein SlyB
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG3133 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1017 FBDBKF_05680 143767 144234 1 Glycine zipper 2TM domain-containing protein Morganella morganii S1
1 group_1017 EHELCC_11910 37260 37727 -1 Glycine zipper 2TM domain-containing protein Morganella morganii S2
2 group_1017 NLDBIP_12250 37215 37682 -1 Glycine zipper 2TM domain-containing protein Morganella morganii S4
3 group_1017 LHKJJB_12110 37260 37727 -1 Glycine zipper 2TM domain-containing protein Morganella morganii S3
4 group_1017 HKOGLL_10725 37260 37727 -1 Glycine zipper 2TM domain-containing protein Morganella morganii S5
5 group_1017 F4V73_RS03625 770469 770939 -1 glycine zipper 2TM domain-containing protein Morganella psychrotolerans
6 group_1017 PMI_RS06710 1467591 1468058 1 glycine zipper 2TM domain-containing protein Proteus mirabilis HI4320