COG3108


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3108, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized conserved protein YcbK, DUF882 family
Function(s) descr. Function unknown (S)

Occurence in the database

COG3108 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1245 FBDBKF_07240 126134 126682 1 ycbK DUF882 domain-containing protein Morganella morganii S1
1 group_1245 EHELCC_03730 59504 60052 -1 ycbK DUF882 domain-containing protein Morganella morganii S2
2 group_1245 NLDBIP_03730 59300 59848 -1 ycbK DUF882 domain-containing protein Morganella morganii S4
3 group_1245 LHKJJB_09560 59414 59962 -1 ycbK DUF882 domain-containing protein Morganella morganii S3
4 group_1245 HKOGLL_09415 131090 131638 1 ycbK DUF882 domain-containing protein Morganella morganii S5
5 group_1245 F4V73_RS01425 314164 314712 1 YcbK family protein Morganella psychrotolerans
6 group_3832 F4V73_RS06170 1300051 1300449 -1 M15 family metallopeptidase Morganella psychrotolerans
7 group_1245 PMI_RS03595 806448 806996 1 YcbK family protein Proteus mirabilis HI4320