Homologs in group_1245

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07240 FBDBKF_07240 100.0 Morganella morganii S1 ycbK DUF882 domain-containing protein
NLDBIP_03730 NLDBIP_03730 100.0 Morganella morganii S4 ycbK DUF882 domain-containing protein
LHKJJB_09560 LHKJJB_09560 100.0 Morganella morganii S3 ycbK DUF882 domain-containing protein
HKOGLL_09415 HKOGLL_09415 100.0 Morganella morganii S5 ycbK DUF882 domain-containing protein
F4V73_RS01425 F4V73_RS01425 95.1 Morganella psychrotolerans - YcbK family protein
PMI_RS03595 PMI_RS03595 76.9 Proteus mirabilis HI4320 - YcbK family protein

Distribution of the homologs in the orthogroup group_1245

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1245

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AB09 4.4e-87 256 65 0 182 3 ycbK Uncharacterized protein YcbK Shigella flexneri
P0AB06 4.4e-87 256 65 0 182 3 ycbK Uncharacterized protein YcbK Escherichia coli (strain K12)
P0AB07 4.4e-87 256 65 0 182 3 ycbK Uncharacterized protein YcbK Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AB08 4.4e-87 256 65 0 182 3 ycbK Uncharacterized protein YcbK Escherichia coli O157:H7
P44284 4.17e-31 112 42 1 125 4 HI_1666 Uncharacterized protein HI_1666 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P44283 2.86e-11 58 65 0 35 4 HI_1665 Uncharacterized protein HI_1665 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_03730
Feature type CDS
Gene ycbK
Product DUF882 domain-containing protein
Location 59504 - 60052 (strand: -1)
Length 549 (nucleotides) / 182 (amino acids)

Contig

Accession ZDB_214
Length 335585 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1245
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF05951 Bacterial protein of unknown function (DUF882)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3108 Function unknown (S) S Uncharacterized conserved protein YcbK, DUF882 family

Protein Sequence

MDTIDNDRRKWLGFGAAALGLALLPNHAFASLTTPRPKILRFENLNTGEFLKAEFFDGKRYNRSELARLNKLFRDHRSNKVKTIDPHLFDQMYLLQVMMNINKPIQLVSGYRSLVTNNELRRTTSGVAKKSYHTRGQAMDFRIPGIQLSQVRKAAMKMRAGGVGYYPSSNFVHMDTGPVRTW

Flanking regions ( +/- flanking 50bp)

TCGCTGTCCGGCCATGTAATATTTAATCAGATAAAGAGTGATTACCGTCAATGGATACAATTGATAACGACCGCCGTAAATGGTTGGGTTTTGGTGCGGCGGCGCTGGGGTTGGCTTTATTACCGAATCACGCATTTGCGTCCCTGACCACACCCCGGCCGAAAATTTTACGGTTTGAAAACCTCAATACCGGTGAATTTTTGAAAGCAGAATTTTTTGACGGTAAACGTTATAACCGCTCTGAACTGGCCCGCCTGAACAAGTTGTTCCGCGACCACCGCAGTAATAAAGTCAAAACCATTGACCCGCACCTGTTTGACCAGATGTATCTGTTGCAGGTGATGATGAACATCAATAAACCTATTCAGCTGGTGTCAGGTTACCGTTCTCTGGTCACTAATAATGAACTGCGCAGAACCACCTCCGGTGTGGCGAAGAAAAGTTATCACACCCGCGGACAGGCAATGGATTTCCGTATTCCGGGCATCCAGTTAAGTCAGGTTCGTAAAGCAGCCATGAAAATGCGGGCTGGTGGTGTGGGTTACTATCCGTCCAGTAATTTCGTTCATATGGATACAGGACCGGTCAGAACGTGGTAATCTGTTGTTATTACCCGCTTTAACCGGAGTTTTGTGTCATGCAATATCAT